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Hello and welcome. My name is ***** ***** I'm a biologist with over 40 years experience raising Guinea pigs and rabbits. I would like to help you today. Some additional information will be useful. Are there actual blood clots, or just red? Do you have any way to determine if it is in the stool or the urine - very different conditions cause the two? How long has this been happening? Do you feed him a variety of fruits and vegetables? Thank you.