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I'm glad you are not going barefoot
you should be wearing indoor shoes.
you should also be stretching and icing your feet as well
you should get a bag of ice and wrap it in a towel and ice the bottom of your feet.
are you overweight? being overweight can put extra pressure on the bottom of your feet as well.
no. pain is a sign of injury or inflammation.
you should rest and stretch and ice until the pain is gone and then go back to running when the pain is gone.
don't run through the pain