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Did they do a biopsy of your bladder at the time of cystoscopy to evaluate for interstitial cystitis? If they ever put you on any medication such as oxybutynin for bladder spasms? Did this help?
The most likely cause for your symptoms are bladder spasms due to an overactive bladder. The first line of therapy would be to put you want to medication such as oxybutynin to stop bladder spasms. If this does not work after several months, then the doctor should consider trying to treat you for interstitial cystitis. Interstitial cystitis is not very common. Overactive bladder is very common and is the most likely cause of your symptoms. I would highly recommend that you get into see a urologist to discuss this. Hope this helps.