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Do you have a toyota compatible scan tool? The Techstream 2 works best.
You will need to perform a linear solenoid initialization and then re-scan for codes. It looks like it might be hanging up the other modules based on those codes you have.
Was the Maxisys able to initialize the linear solenoid? I'm not familiar with that tool.
The ABS is going to act really wacky if it isn't initialized correctly. It will think it can't apply the brakes on that wheel because of a potential traction loss.