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Did you mail in the extension form?
Did you file the return yet. If you filed the return the IRS will send you a letter stating that the tax information doesn't match the data the IRS has on file from the Social Security Administration.
You do not need to file an amended return. You would still file the 1040. The IRS likely caught the transposition and applied your payment to the correct number. If this is not the case you will receive a notice. Once you receive the notice you would either prepare a letter explaining what happened, the social security that you applied the payment to, you would instruct the IRS to move the payment to the proper account. You could also call the IRS at 1-***-***-****.
This is not Turbo Tax support. I am sorry for the confusion.
It is an easy fix. It is just a matte of associated the payment to the correct account.
I would suggest contacting customer support. Just file your 1040 with the correct SSN#. If you receive a notice from the IRS, it is an easy fix to move the payment to the correct account.
I do not have the ability to cancel the transaction on my end.