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Hi from just answer. I'm PDtax. I can assist.
It is possible that you do owe the taxes. The refinancing of the properties and subsequent short sales means you 'sold' for the amount of the refinanced debt. There could be taxes to pay.
However, your bankruptcy filing intrigues me. You might be able to claim that the gains should not be taxed, due to insolvency.
A review of your tax situation, returns filed and the bankruptcy petition might allow for relief. Go to another tax pro for a review. Well worth the fee they might charge for an hour of their time. Ask your bankruptcy attorney for a referral to a tax pro if needed.
Thanks for asking at just answer. Positive feedback is appreciated. I'm PDtax.