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According to instructions for that line -
Don't include salaries and wages reported elsewhere on the return, such as amounts included in cost of goods sold, elective contributions to a section 401(k) cash or deferred arrangement, or amounts contributed under a salary reduction SEP agreement or a SIMPLE IRA plan.
So SEP contributions should NOT be included into that line.
Contributions an employer can make to an employee's SEP-IRA cannot exceed the lesser of:
Note: Elective salary deferrals and catch-up contributions are not permitted in SEP plans.
See for reference -
Publication 560, Retirement Plans for Small Business (SEP, SIMPLE, and Qualified Plans)
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