Message defintitions from Turbo Tax are:
IN_AGENCY: The agency has successfully received the submission, but has not yet confirmed whether it was accepted or processed. Acknowledgement can take up to a few days to get back.
SUCCEEDED_AGENCY: An acknowledgement was received from the agency, and they have accepted the payment.
so in your case the return was successfully submitted and then later was acknowledged as received and your payment was received.
That is not what htey are referring to. If you filed electronically and was not eligible for free file, you may have paid a fee using your credit card or authorizing it to come out of your tax refund. This is internal code to the administration of your online filing using Turbo Tax.
If your credit card or debit card does not show the payment it is because of a time lag of sometimes 3 days to show up on your accounts, or it is being taken from your refund.
Turbo tax is supposed to have an option for making the selection of how you want it done.