Yes the swans if they were real would drive off all other waterfowl from their nesting area and the mallards may be avoiding the usual ponds due to the decoys.
You might consider seeing if floating the decoys only during migration season worked on the geese without impacting the ducks.
You can read about more goose deterrents here
http://www.getridofthings.com/get-rid-of-geese.htm
and this product makes the grass taste bad to them
http://birdbgone.com/index.php?option=com_content&view=article&id=65&Itemid=91
Geese can also drive out the ducks from a pond.
Yes a pond can become very polluted from over use by water fowl.
Hope this helps you!
Wild Bird Expert
Rehabbing wild birds, raising nestlings, study and observation of many species