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My name is ***** ***** I have been a Vet tech fr 30+ years when I hear about this type of problem there are several issues that can cause this and all need to be addressed by a Guinea Pig Savy Vet. A UTI is a possibility; so is a uterine infection which is called a Pyometra. If it is a pyometra, that requires immediate attention. Pyometra's is when the uterus fills up with Pus and Coco can go septic from the infection. In either case, it is wise to have her seen asap to be diagnosed hands on and a culture done so appropriate treatment is started. This is about UTI: http://www.guinealynx.info/uti.html and this is about Pyometras: http://54monkeys.com/2015/09/08/5-things-guinea-pig-owners-need-to-know-about-pyometra/
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So sorry she had to go though that and glad you found the problem. I was hoping it was no more than a UTI. If I have addressed your concerns, please take a moment to rate my service 5 stars so I can be compensated for my answers..