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Sounds to me as if your dog has an ear infection, which would explain why he doesn't like you touching his ears and why he's scratching the hair off his neck.
I suggest you get him in to see a vet. They'll do an ear cytology (where they take a cotton swab and use it to see what's in the ear, then they roll the debris on a microscope slide to identify what kind of infection he has going on) and will most likely prescribe medications which could include both topical and oral antibiotics.
I would make sure to do this soon however, as ear infections are very painful and if left untreated, can cause hearing loss.
I hope this helps.