Motorcycle Questions? Ask a Mechanic.
1st replace the spark plugs if any of them fail this checklist:http://www.ngksparkplugs.com/tech_support/spark_plugs/faqs/faqread.asp
You can also try spraying some water on the coil pack with the engine running. It is possible the coil is faulty and causing the misfire. If you see sparks arcing with the water, then replace the coil.
I'd check the condition of the injector plugs / connections as this could be a lean misfire if an injector isn't firing properly - the best way to check this is with a 'noid' light
Then check all the connections to the engine sensors one at a time, remove each one and examine for signs of corrosion or damage and a squirt of contact cleaner ( not WD40) will also help.
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