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Hi, welcome to JustAnswer. I'm Dr. Hasan and I'll try to help you. I am reviewing your question and I will get back to you as soon as possible.
Your pain is because of pulled muscles. Your cough is so bad and St this stage I would suggest that you should see a doctor. Nothing is serious but you might need some supportive treatment. Pain aggravation with moment suggest that it's muscular. Regards
Yes it can be because of something like an infection in Base of lungs si better get tested.
Well then its muscular if your doctor has cleared your chest.