This would be considered theft by fraud and also forgery if the employee did not have authorization to sign as representative of the company. The transfer needed a signature from a representative of the original owner and if this employee lied claiming they were the authorized representative of the company when making the transfer or forged someone's signature on the transfer, she has committed theft and forgery and filing false public documents. It is not something the FBI gets involved in, it is a violation of state law and it is something your local police gets involved in and you need to file a police report for theft and forgery.
The BMV only looks as the documents to see if they were completed and they have no way of knowing who the agent of the owner is and if this person signed as agent or as owner to make the transfer it would not be up to BMV to verify I am afraid and your claim would be against the ex-employee.
You need to file a complaint with the police for theft and forgery and have them investigate to get your car back. You can also file a civil suit for the same charges against her and seek monetary damages or return of the vehicle through the civil court.
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