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Did this happen right after the accident?
There is a switch attached to the hood latch that may be disconnected or faulty.
I will try to do that for you.
this link will take you to an xps document.
That does sound like it because if a door, hatch or hood is left open it will not beep on the second push of the button.
Anything is possible but I would first check and make sure the hood latch switch is plugged in.
If you just got the CR-V back from the body shop you might want to let them know. I would also tell your insurance company.
In the link I posted is a picture that shows there should be a connector plugged into the latch.
You need to see if it is there. You may have to remove a plastic panel to get to it.
Here is the link again as a PDF. file.