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Well as you describe you should see your doctor for a clinical examination and X-ray Chest,Cervical spine should be done in your case.
Pain can be associated with nerve impingement at cervical spine.
Other possible causes may include Muscle strain.
Your history of autoimmune disease can also contributing factor.
However main concern is shortness of breath which is usually not to be ignored so I advise you to see your doctor for chest auscultation.
As your symptoms are getting worse over the time so a visit to ER can be considered ASAP.
Hope this helps.
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