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Yes my dear, it is possible for the things you eat to have an effect on you in this way, but not to this extent. The odor should still be a mild one. It sounds to me, from what you have described like your wife needs to see her doc. You two may have an infection going on that you are passing back and fourth, and you both may need to be treated with antibiotics for it to go away. When your wife sees her OBGYN, all she has to do is explain what is going on, and he will send an extra prescription home for you also. Many times these infections will show little to no symptoms, and not having them taken care of can sometimes cost you your fertility. The dark urine you are noticing could be related directly to the possible infection that I have been talking about, or just from you being dehydrated a little. This is pretty common for guys, especially in the morning for their urine to be a little dark and concentrated - but if it continues throughout the day, then try drinking more water and fluids that rehydrate you...like Gatorade etc...cut down on the soda, coffee, beer, etc... and this should help. I would really suggest though that your wife be checked I would just as soon error on the side of caution and be sure. There is definitely something going on, and I would not wait.
Good luck to you and your wife...