Lincoln Repair Questions? Ask a Mechanic for Answers ASAP
All of those codes point to a communication problem with the PCM. I would start by checking all of the electrical connections leading to and from the PCM. Next you may have to start looking at replacing the PCM, which will require a reflash by the dealer, or someone with a ford IDS tool.
Three of those codes point to communication with the instrument cluster as a possible problem, but I don't think that would affect drive-ability.
I definitely think the drivability problems are related to the communication problems. I would see if you can get a transmission specific shop to check transmission communications. If they can't get the transmission to communicate then see if they will replace the transmission wiring harness. If the transmission communicates then the PCM may be at fault.