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Hello, this is Dr. Jess. I am sorry to hear about your dogs (and your flood!). It is possible that bacteria in the sewage could have gotten onto the skin and caused a local infection, or even just the moisture (if they were standing in water) could have caused a bacterial or yeast overgrowth. We can also see dogs lick their feet as a result of allergies. How long has this been going on for?
It might not be a bad idea. They may just need a medicated shampoo or medicated wipes,but they may need oral medication depending on how bad it is. Have you already washed their feet? Did this just happen?
What a fiasco for you! It is possible the sewage made the feet irritated or that they are having a contact allergy reaction to whatever they cleaned the floor with. If he is also acting lethargic, I think that is a reason in and of itself to get him in to your vet. It may be coincidental that it started around the time of the flood,but either way, he should be examined and possibly have some bloodwork done, as well as determine how best to treat their feet.
You are welcome. Best of luck to you and I hope that everything gets sorted out with the dogs and your home! What a tough time!
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Hope it goes well and they can get some relief!