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I am sorry to hear you are worried about your dog. I am a veterinarian and will do my best to help.
How long ago did they get this, best guess?
The main concern is the cocoa in the whey protein. Do you know the name of the product, and about how much they ate? If so, I can do some calculations and see if they got enough to be worried about. I had never heard of chocolate whey protein, so I looked it up (that is how I found out it has cocoa in it) but the cases I read about, all the dog were fine.
How are your dogs doing?